diff --git a/doxy/Doxyfile.java.in b/doxy/Doxyfile.java.in
index a23122d0..3e38d8fd 100644
--- a/doxy/Doxyfile.java.in
+++ b/doxy/Doxyfile.java.in
@@ -767,7 +767,7 @@ WARN_LOGFILE           =
 INPUT                  = @CMAKE_CURRENT_SOURCE_DIR@/src/upm.h \
                          @CMAKE_CURRENT_SOURCE_DIR@/build/src/ \
                          @CMAKE_CURRENT_SOURCE_DIR@/docs/ \
-                         @CMAKE_CURRENT_SOURCE_DIR@/docs/README.java.md
+                         @CMAKE_CURRENT_SOURCE_DIR@/doxy/README.java.md
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -946,7 +946,7 @@ FILTER_SOURCE_PATTERNS =
 # (index.html). This can be useful if you have a project on for instance GitHub
 # and want to reuse the introduction page also for the doxygen output.
 
-USE_MDFILE_AS_MAINPAGE = @CMAKE_CURRENT_SOURCE_DIR@/docs/README.java.md
+USE_MDFILE_AS_MAINPAGE = @CMAKE_CURRENT_SOURCE_DIR@/doxy/README.java.md
 
 #---------------------------------------------------------------------------
 # Configuration options related to source browsing